PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g036020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 394aa    MW: 44697.8 Da    PI: 4.8372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g036020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1813105199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   + ++s+ +v+p ++  +h ++   +k+++l+ + grsW+v   +r++++++ +++GW +Fv++n L++gDf++F ++g++ f   v+
  Csa14g036020.1  13 FFKVF--VSLFSSDSMVIPIPYD-DH-LPRLLPKKVILQGPGGRSWNVATEIRGGGDEVHFAQGWPKFVEDNTLNDGDFLTFVYNGNHIF--EVS 101
                     88999..89999*********96.66.44568899***************99*********************************99999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +fr+
  Csa14g036020.1 102 IFRS 105
                     9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.21E-1911104No hitNo description
Gene3DG3DSA:2.40.330.101.5E-2011108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.66311106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-2211108IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-1913106IPR003340B3 DNA binding domain
PfamPF023623.5E-1613105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAAATEFQFP PRFFKVFVSL FSSDSMVIPI PYDDHLPRLL PKKVILQGPG GRSWNVATEI  60
RGGGDEVHFA QGWPKFVEDN TLNDGDFLTF VYNGNHIFEV SIFRSDGCKE TSEVFEVSED  120
EGDSVCSLSS DNTETRSKPE MENPIPQGTD KGKSKVELVE DSDEDEDSVY SESSEETETE  180
SDSGSEFRIG KTTPKRKNKG KKKDQEVVPV EEESSEEDGD GDSDSDYIEA FGQLAVEDES  240
NSEDSSYAPE EEDTAASTTC VKAKVANLKR KDAAKKRKKV DPKIKNPETY LDDPKNIHFE  300
TNVKNRLYEL LVHAQLVKDY CLRFGDYVDY IDRFGKLRAK TAKWKDQRVC IKRWMRICKR  360
NRLTKEDRVL CELLRRGSFV YAIKLHVVRG KNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A7e-141210810104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195203RKNKGKKKD
2274278KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937171e-116AB493717.1 Arabidopsis thaliana At4g34400 mRNA for hypothetical protein, partial cds, clone: RAAt4g34400.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460626.10.0PREDICTED: B3 domain-containing protein At4g34400-like
SwissprotQ9SZ051e-167Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLR0F8940.0R0F894_9BRAS; Uncharacterized protein (Fragment)
STRINGscaffold_700694.11e-176(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-150B3 family protein